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oligo binding buffer  (Zymo Research)


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    Structured Review

    Zymo Research oligo binding buffer
    Oligo Binding Buffer, supplied by Zymo Research, used in various techniques. Bioz Stars score: 95/100, based on 58 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/oligo+binding+buffer/Oligo+Binding+Buffer/us12601006-265-27-30
    Average 95 stars, based on 58 article reviews
    oligo binding buffer - by Bioz Stars, 2026-09
    95/100 stars

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    Related Articles

    other:

    Article Title: The functional organization of chromosome territories in single nuclei during zygotic genome activation.
    Article Snippet: The designed library was amplified using Kapa Taq enzyme (Kapa Biosystems, 5 U/μl), with the following PCR program: 95 C, 5 min, (95 C for 30 s, 58 C for 30 s, 72 C for 20 s) repeated 12 times, 72 C 5 min, hold at 4 C. The linear PCR products were purified using DNA Clean & Concentrator-5 (DCC-5) kit (Zymo Research).

    Binding Assay:

    Article Title: Deciphering chromosome fusion in D. miranda’s neo-sex chromosome through single-copy and repetitive oligo probes
    Article Snippet: .. 240 μl of Oligo binding buffer (Zymo Research) and 960 μl of absolute ethanol were added to the previous reaction. .. The components were mixed, and finally, the oligos were purified using DCC-25 (Zymo Research).

    Article Title: Targeted, long-read nucleic acid sequencing for the determination of cytosine modifications
    Article Snippet: .. The sample was incubated at 37° C. and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified on Zymo-IC column (Zymo Research) with Oligo binding buffer (Zymo Research). .. The samples was eluted in 15 μL of water and amplified the converted DNA in 50 μL PCR reaction with KAPA HiFi HotStart Uracil+ReadyMix (KAPA) and indexed primers in NEBNext Multiplex Oligos for Illumina kit (NEB).

    Article Title: Genome-wide extraction of differentially methylated DNA regions using adapter-anchored proximity primers
    Article Snippet: Oxidized DNA was then reduced in a 50 μl of reaction containing 100 mM sodium acetate solution (pH = 4.0) and 100 mM pic-borane (Alfa Aesar) for 6 h at 37°C and 850 rpm in the Eppendorf ThermoMixer. .. The product was purified by Zymo-IC column with Oligo Binding Buffer (Catalog No. D4060, ZYMO Research). .. For both EM-Seq and TAPS-converted libraries, pre-amplification was performed using NEBNext Q5U Master Mix (Catalog No. M0597) with primers targeting the adapters ( ) for 8 cycles, following the manufacturer’s protocol.

    Article Title: The functional organization of chromosome territories in single nuclei during zygotic genome activation
    Article Snippet: Using the reverse transcriptase Maxima H Minus RT (ThermoFisher Scientific), RNA was reverse transcribed into DNA, and the RT enzyme was inactivated at 85 °C for 5 min. After the inactivation of the RT enzyme, all RNA in the solution was degraded using alkaline hydrolysis (0.5 M EDTA and 1 M NaOH in 1:1) at 95 °C for 10 min. .. Subsequently, the oligos were purified using the same clean-up kit with the Oligo binding buffer (Zymo Research). ..

    Article Title: The Fanconi anemia pathway repairs colibactin-induced DNA interstrand cross-links
    Article Snippet: The plates were further incubated at 37 °C without shaking for 5 h. The contents in the 96-well plates were then recombined and spun down at 4000 × g for 20 min, and the supernatant was carefully decanted and filtered through a 0.22 μM PES filter (Corning), flash frozen in liquid nitrogen, and lyophilized to complete dryness. .. Dried samples were reconstituted in Oligo Binding Buffer (Zymo) and purified using the Oligo Clean & ConcentratorTM Kit (Zymo) following the manufacturer’s protocol. ..

    Article Title: Targeted, long-read nucleic acid sequencing for the determination of cytosine modifications
    Article Snippet: The reaction was incubated at 30° C. for 80 min. 1 μL of Proteinase K (NEB, 0.8 μL) was added to the oxidation reaction and incubated for 1 h at 50° C. 6 μL of 3 M sodium acetate buffer solution (pH 4.3) and 3 μL of pyridine borane (Alfa Aesar, —10 M) were added to the 21 μL DNA sample (final 30 μL reaction contains 600 mM NaAc and 1 M pyridine borane). .. The solution was incubated at 37° C. and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified on Zymo-IC column (Zymo Research) with Oligo binding buffer (Zymo Research) according to the manufacturer's protocol and eluted in 20 μL of water. ..

    Incubation:

    Article Title: Targeted, long-read nucleic acid sequencing for the determination of cytosine modifications
    Article Snippet: .. The sample was incubated at 37° C. and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified on Zymo-IC column (Zymo Research) with Oligo binding buffer (Zymo Research). .. The samples was eluted in 15 μL of water and amplified the converted DNA in 50 μL PCR reaction with KAPA HiFi HotStart Uracil+ReadyMix (KAPA) and indexed primers in NEBNext Multiplex Oligos for Illumina kit (NEB).

    Article Title: Targeted, long-read nucleic acid sequencing for the determination of cytosine modifications
    Article Snippet: The reaction was incubated at 30° C. for 80 min. 1 μL of Proteinase K (NEB, 0.8 μL) was added to the oxidation reaction and incubated for 1 h at 50° C. 6 μL of 3 M sodium acetate buffer solution (pH 4.3) and 3 μL of pyridine borane (Alfa Aesar, —10 M) were added to the 21 μL DNA sample (final 30 μL reaction contains 600 mM NaAc and 1 M pyridine borane). .. The solution was incubated at 37° C. and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified on Zymo-IC column (Zymo Research) with Oligo binding buffer (Zymo Research) according to the manufacturer's protocol and eluted in 20 μL of water. ..

    Purification:

    Article Title: Targeted, long-read nucleic acid sequencing for the determination of cytosine modifications
    Article Snippet: .. The sample was incubated at 37° C. and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified on Zymo-IC column (Zymo Research) with Oligo binding buffer (Zymo Research). .. The samples was eluted in 15 μL of water and amplified the converted DNA in 50 μL PCR reaction with KAPA HiFi HotStart Uracil+ReadyMix (KAPA) and indexed primers in NEBNext Multiplex Oligos for Illumina kit (NEB).

    Article Title: Genome-wide extraction of differentially methylated DNA regions using adapter-anchored proximity primers
    Article Snippet: Oxidized DNA was then reduced in a 50 μl of reaction containing 100 mM sodium acetate solution (pH = 4.0) and 100 mM pic-borane (Alfa Aesar) for 6 h at 37°C and 850 rpm in the Eppendorf ThermoMixer. .. The product was purified by Zymo-IC column with Oligo Binding Buffer (Catalog No. D4060, ZYMO Research). .. For both EM-Seq and TAPS-converted libraries, pre-amplification was performed using NEBNext Q5U Master Mix (Catalog No. M0597) with primers targeting the adapters ( ) for 8 cycles, following the manufacturer’s protocol.

    Article Title: The functional organization of chromosome territories in single nuclei during zygotic genome activation
    Article Snippet: Using the reverse transcriptase Maxima H Minus RT (ThermoFisher Scientific), RNA was reverse transcribed into DNA, and the RT enzyme was inactivated at 85 °C for 5 min. After the inactivation of the RT enzyme, all RNA in the solution was degraded using alkaline hydrolysis (0.5 M EDTA and 1 M NaOH in 1:1) at 95 °C for 10 min. .. Subsequently, the oligos were purified using the same clean-up kit with the Oligo binding buffer (Zymo Research). ..

    Article Title: The Fanconi anemia pathway repairs colibactin-induced DNA interstrand cross-links
    Article Snippet: The plates were further incubated at 37 °C without shaking for 5 h. The contents in the 96-well plates were then recombined and spun down at 4000 × g for 20 min, and the supernatant was carefully decanted and filtered through a 0.22 μM PES filter (Corning), flash frozen in liquid nitrogen, and lyophilized to complete dryness. .. Dried samples were reconstituted in Oligo Binding Buffer (Zymo) and purified using the Oligo Clean & ConcentratorTM Kit (Zymo) following the manufacturer’s protocol. ..

    Article Title: Targeted, long-read nucleic acid sequencing for the determination of cytosine modifications
    Article Snippet: The reaction was incubated at 30° C. for 80 min. 1 μL of Proteinase K (NEB, 0.8 μL) was added to the oxidation reaction and incubated for 1 h at 50° C. 6 μL of 3 M sodium acetate buffer solution (pH 4.3) and 3 μL of pyridine borane (Alfa Aesar, —10 M) were added to the 21 μL DNA sample (final 30 μL reaction contains 600 mM NaAc and 1 M pyridine borane). .. The solution was incubated at 37° C. and 850 rpm in a ThermoMixer (Eppendorf) for 16 h. The reaction was purified on Zymo-IC column (Zymo Research) with Oligo binding buffer (Zymo Research) according to the manufacturer's protocol and eluted in 20 μL of water. ..



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